Detailed information of SNP:
|
SNP ID:
sf1217481026(Gbrowse)
Chromosome: chr12 Position: 17481026 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 96.54% | 3.46% |
| All Indica | 799 | 98.00% | 2.00% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 65 | 55.38% | 44.62% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217481026 | C->T | LOC_Os12g29434(LOC_Os12g29434.1) | SNPs that introduce stop codons |