Detailed information of SNP:
|
SNP ID:
sf1217486769(Gbrowse)
Chromosome: chr12 Position: 17486769 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 81.16% | 18.84% |
| All Indica | 799 | 98.62% | 1.38% |
| All Japonica | 493 | 49.49% | 50.51% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 332 | 28.92% | 71.08% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 82.09% | 17.91% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217486769 | T->C | INTERGENIC | None |