Detailed information of SNP:
|
SNP ID:
sf1217491132(Gbrowse)
Chromosome: chr12 Position: 17491132 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 80.48% | 19.52% |
| All Indica | 799 | 71.34% | 28.66% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 78.93% | 21.07% |
| Indica II | 213 | 62.91% | 37.09% |
| Indica Intermediate | 211 | 66.35% | 33.65% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217491132 | G->A | LOC_Os12g29450(LOC_Os12g29450.1) | Non-Synonymous SNP |