Detailed information of SNP:
|
SNP ID:
sf1217524143(Gbrowse)
Chromosome: chr12 Position: 17524143 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 53.36% | 46.64% |
| All Indica | 797 | 29.49% | 70.51% |
| All Japonica | 495 | 98.79% | 1.21% |
| Aus | 66 | 7.58% | 92.42% |
| Indica I | 373 | 28.69% | 71.31% |
| Indica II | 213 | 35.68% | 64.32% |
| Indica Intermediate | 211 | 24.64% | 75.36% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217524143 | G->A | LOC_Os12g29489(LOC_Os12g29489.1) | INTRON |