Detailed information of SNP:
|
SNP ID:
sf1217525051(Gbrowse)
Chromosome: chr12 Position: 17525051 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 76.60% | 23.40% |
| All Indica | 793 | 96.72% | 3.28% |
| All Japonica | 490 | 39.39% | 60.61% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 369 | 96.21% | 3.79% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 329 | 14.89% | 85.11% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 76.12% | 23.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217525051 | C->T | INTERGENIC | None |