Detailed information of SNP:
|
SNP ID:
sf1217527612(Gbrowse)
Chromosome: chr12 Position: 17527612 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 91.72% | 8.28% |
| All Indica | 799 | 98.62% | 1.38% |
| All Japonica | 491 | 80.86% | 19.14% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 94.01% | 5.99% |
| Tropical Japonica | 92 | 42.39% | 57.61% |
| Japonica Intermediate | 65 | 67.69% | 32.31% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217527612 | A->G | INTERGENIC | None |