Detailed information of SNP:
|
SNP ID:
sf1217529337(Gbrowse)
Chromosome: chr12 Position: 17529337 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 58.10% | 41.90% |
| All Indica | 793 | 75.54% | 24.46% |
| All Japonica | 497 | 35.21% | 64.79% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 371 | 75.20% | 24.80% |
| Indica II | 211 | 82.46% | 17.54% |
| Indica Intermediate | 211 | 69.19% | 30.81% |
| Temperate Japonica | 335 | 10.45% | 89.55% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217529337 | T->A | INTERGENIC | None |