Detailed information of SNP:
|
SNP ID:
sf1217545187(Gbrowse)
Chromosome: chr12 Position: 17545187 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 70.80% | 29.20% |
| All Indica | 799 | 97.37% | 2.63% |
| All Japonica | 490 | 23.27% | 76.73% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 333 | 11.41% | 88.59% |
| Tropical Japonica | 90 | 52.22% | 47.78% |
| Japonica Intermediate | 67 | 43.28% | 56.72% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217545187 | C->G | INTERGENIC | None |