Detailed information of SNP:
|
SNP ID:
sf1217545692(Gbrowse)
Chromosome: chr12 Position: 17545692 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1393 | 65.69% | 34.31% |
| All Indica | 794 | 92.07% | 7.93% |
| All Japonica | 480 | 17.50% | 82.50% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 372 | 92.74% | 7.26% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 209 | 91.39% | 8.61% |
| Temperate Japonica | 327 | 6.42% | 93.58% |
| Tropical Japonica | 88 | 46.59% | 53.41% |
| Japonica Intermediate | 65 | 33.85% | 66.15% |
| Group VI/Aromatic | 12 | 58.33% | 41.67% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217545692 | A->G | INTERGENIC | None |