Detailed information of SNP:
|
SNP ID:
sf1217545735(Gbrowse)
Chromosome: chr12 Position: 17545735 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 70.24% | 29.76% |
| All Indica | 796 | 97.49% | 2.51% |
| All Japonica | 489 | 22.09% | 77.91% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 98.40% | 1.60% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 209 | 95.22% | 4.78% |
| Temperate Japonica | 328 | 10.06% | 89.94% |
| Tropical Japonica | 93 | 49.46% | 50.54% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217545735 | T->C | INTERGENIC | None |