Detailed information of SNP:



SNP ID: sf1217545862(Gbrowse)

Chromosome: chr12

Position: 17545862
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1417 99.08% 0.92%
All Indica799 99.75% 0.25%
All Japonica495 97.78% 2.22%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 99.53% 0.47%
Indica Intermediate211 99.53% 0.47%
Temperate Japonica335 98.51% 1.49%
Tropical Japonica94 96.81% 3.19%
Japonica Intermediate66 95.45% 4.55%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1217545862 C->T INTERGENIC None