Detailed information of SNP:
|
SNP ID:
sf1217545887(Gbrowse)
Chromosome: chr12 Position: 17545887 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 60.38% | 39.62% |
| All Indica | 791 | 42.23% | 57.77% |
| All Japonica | 493 | 86.21% | 13.79% |
| Aus | 66 | 72.73% | 27.27% |
| Indica I | 375 | 18.93% | 81.07% |
| Indica II | 210 | 81.43% | 18.57% |
| Indica Intermediate | 206 | 44.66% | 55.34% |
| Temperate Japonica | 334 | 97.31% | 2.69% |
| Tropical Japonica | 92 | 57.61% | 42.39% |
| Japonica Intermediate | 67 | 70.15% | 29.85% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217545887 | C->A | INTERGENIC | None |