Detailed information of SNP:
|
SNP ID:
sf1217546380(Gbrowse)
Chromosome: chr12 Position: 17546380 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 74.06% | 25.94% |
| All Indica | 796 | 64.07% | 35.93% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 374 | 85.29% | 14.71% |
| Indica II | 211 | 24.64% | 75.36% |
| Indica Intermediate | 211 | 65.88% | 34.12% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217546380 | G->T | INTERGENIC | None |