Detailed information of SNP:
|
SNP ID:
sf1217546398(Gbrowse)
Chromosome: chr12 Position: 17546398 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1407 | 54.37% | 45.63% |
| All Indica | 788 | 40.23% | 59.77% |
| All Japonica | 496 | 72.58% | 27.42% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 373 | 17.96% | 82.04% |
| Indica II | 212 | 79.25% | 20.75% |
| Indica Intermediate | 203 | 40.39% | 59.61% |
| Temperate Japonica | 335 | 89.85% | 10.15% |
| Tropical Japonica | 94 | 26.60% | 73.40% |
| Japonica Intermediate | 67 | 50.75% | 49.25% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217546398 | A->C | INTERGENIC | None |