Detailed information of SNP:
|
SNP ID:
sf1217550604(Gbrowse)
Chromosome: chr12 Position: 17550604 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 55.08% | 44.92% |
| All Indica | 798 | 23.56% | 76.44% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 374 | 17.91% | 82.09% |
| Indica II | 213 | 30.99% | 69.01% |
| Indica Intermediate | 211 | 26.07% | 73.93% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217550604 | G->C | INTERGENIC | None |