Detailed information of SNP:
|
SNP ID:
sf1217563168(Gbrowse)
Chromosome: chr12 Position: 17563168 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 57.56% | 42.44% |
| All Indica | 797 | 43.04% | 56.96% |
| All Japonica | 496 | 76.21% | 23.79% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 374 | 22.99% | 77.01% |
| Indica II | 213 | 79.81% | 20.19% |
| Indica Intermediate | 210 | 41.43% | 58.57% |
| Temperate Japonica | 335 | 89.85% | 10.15% |
| Tropical Japonica | 93 | 50.54% | 49.46% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217563168 | T->C | INTERGENIC | None |