Detailed information of SNP:
|
SNP ID:
sf1217563418(Gbrowse)
Chromosome: chr12 Position: 17563418 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1368 | 56.51% | 43.49% |
| All Indica | 786 | 42.62% | 57.38% |
| All Japonica | 472 | 74.36% | 25.64% |
| Aus | 63 | 84.13% | 15.87% |
| Indica I | 375 | 22.93% | 77.07% |
| Indica II | 203 | 79.80% | 20.20% |
| Indica Intermediate | 208 | 41.83% | 58.17% |
| Temperate Japonica | 335 | 89.85% | 10.15% |
| Tropical Japonica | 70 | 31.43% | 68.57% |
| Japonica Intermediate | 67 | 41.79% | 58.21% |
| Group VI/Aromatic | 11 | 90.91% | 9.09% |
| Intermediate | 36 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217563418 | T->C | INTERGENIC | None |