Detailed information of SNP:
|
SNP ID:
sf1217563435(Gbrowse)
Chromosome: chr12 Position: 17563435 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 57.59% | 42.41% |
| All Indica | 797 | 72.15% | 27.85% |
| All Japonica | 497 | 30.18% | 69.82% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 374 | 85.83% | 14.17% |
| Indica II | 213 | 50.70% | 49.30% |
| Indica Intermediate | 210 | 69.52% | 30.48% |
| Temperate Japonica | 335 | 10.45% | 89.55% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217563435 | G->T | INTERGENIC | None |