Detailed information of SNP:
|
SNP ID:
sf1217568851(Gbrowse)
Chromosome: chr12 Position: 17568851 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 73.06% | 26.94% |
| All Indica | 799 | 71.21% | 28.79% |
| All Japonica | 497 | 76.06% | 23.94% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 69.33% | 30.67% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 57.82% | 42.18% |
| Temperate Japonica | 335 | 89.85% | 10.15% |
| Tropical Japonica | 94 | 51.06% | 48.94% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217568851 | T->A | LOC_Os12g29520(LOC_Os12g29520.4) | INTRON |
| sf1217568851 | T->A | LOC_Os12g29520(LOC_Os12g29520.3) | INTRON |
| sf1217568851 | T->A | LOC_Os12g29520(LOC_Os12g29520.5) | INTRON |
| sf1217568851 | T->A | LOC_Os12g29520(LOC_Os12g29520.1) | INTRON |
| sf1217568851 | T->A | LOC_Os12g29520(LOC_Os12g29520.2) | INTRON |