Detailed information of SNP:
|
SNP ID:
sf1217569642(Gbrowse)
Chromosome: chr12 Position: 17569642 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 84.71% | 15.29% |
| All Indica | 799 | 73.47% | 26.53% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 70.13% | 29.87% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 61.14% | 38.86% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217569642 | G->A | LOC_Os12g29520(LOC_Os12g29520.4) | INTRON |
| sf1217569642 | G->A | LOC_Os12g29520(LOC_Os12g29520.3) | INTRON |
| sf1217569642 | G->A | LOC_Os12g29520(LOC_Os12g29520.5) | INTRON |
| sf1217569642 | G->A | LOC_Os12g29520(LOC_Os12g29520.1) | INTRON |
| sf1217569642 | G->A | LOC_Os12g29520(LOC_Os12g29520.2) | INTRON |