Detailed information of SNP:
|
SNP ID:
sf1217574851(Gbrowse)
Chromosome: chr12 Position: 17574851 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 50.95% | 49.05% |
| All Indica | 799 | 65.21% | 34.79% |
| All Japonica | 497 | 24.35% | 75.65% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 78.13% | 21.87% |
| Indica II | 213 | 45.54% | 54.46% |
| Indica Intermediate | 211 | 62.09% | 37.91% |
| Temperate Japonica | 335 | 10.45% | 89.55% |
| Tropical Japonica | 94 | 50.00% | 50.00% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217574851 | C->T | INTERGENIC | None |