Detailed information of SNP:
|
SNP ID:
sf1217598355(Gbrowse)
Chromosome: chr12 Position: 17598355 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 63.46% | 36.54% |
| All Indica | 797 | 51.07% | 48.93% |
| All Japonica | 496 | 83.47% | 16.53% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 374 | 52.41% | 47.59% |
| Indica II | 213 | 39.91% | 60.09% |
| Indica Intermediate | 210 | 60.00% | 40.00% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 93 | 44.09% | 55.91% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217598355 | G->A | INTERGENIC | None |