Detailed information of SNP:
|
SNP ID:
sf1217598845(Gbrowse)
Chromosome: chr12 Position: 17598845 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 85.77% | 14.23% |
| All Indica | 795 | 91.70% | 8.30% |
| All Japonica | 490 | 84.90% | 15.10% |
| Aus | 66 | 28.79% | 71.21% |
| Indica I | 374 | 91.71% | 8.29% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 209 | 89.95% | 10.05% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 90 | 46.67% | 53.33% |
| Japonica Intermediate | 66 | 68.18% | 31.82% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217598845 | C->T | INTERGENIC | None |