Detailed information of SNP:
|
SNP ID:
sf1217600362(Gbrowse)
Chromosome: chr12 Position: 17600362 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 57.52% | 42.48% |
| All Indica | 784 | 55.87% | 44.13% |
| All Japonica | 497 | 64.59% | 35.41% |
| Aus | 66 | 36.36% | 63.64% |
| Indica I | 368 | 44.57% | 55.43% |
| Indica II | 212 | 86.79% | 13.21% |
| Indica Intermediate | 204 | 44.12% | 55.88% |
| Temperate Japonica | 335 | 68.06% | 31.94% |
| Tropical Japonica | 94 | 60.64% | 39.36% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217600362 | C->T | INTERGENIC | None |