Detailed information of SNP:
|
SNP ID:
sf1217603263(Gbrowse)
Chromosome: chr12 Position: 17603263 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 77.36% | 22.64% |
| All Indica | 798 | 71.93% | 28.07% |
| All Japonica | 497 | 87.93% | 12.07% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 375 | 64.27% | 35.73% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 210 | 64.76% | 35.24% |
| Temperate Japonica | 335 | 91.94% | 8.06% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217603263 | G->A | LOC_Os12g29540(LOC_Os12g29540.1) | INTRON |