Detailed information of SNP:
|
SNP ID:
sf1217605881(Gbrowse)
Chromosome: chr12 Position: 17605881 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1407 | 92.18% | 7.82% |
| All Indica | 787 | 95.43% | 4.57% |
| All Japonica | 497 | 89.13% | 10.87% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 366 | 95.90% | 4.10% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 209 | 92.34% | 7.66% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 69.15% | 30.85% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217605881 | T->C | INTERGENIC | None |