Detailed information of SNP:
|
SNP ID:
sf1217605922(Gbrowse)
Chromosome: chr12 Position: 17605922 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 76.11% | 23.89% |
| All Indica | 799 | 70.21% | 29.79% |
| All Japonica | 497 | 87.53% | 12.47% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 375 | 64.53% | 35.47% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 211 | 61.14% | 38.86% |
| Temperate Japonica | 335 | 91.94% | 8.06% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217605922 | G->A | INTERGENIC | None |