Detailed information of SNP:
|
SNP ID:
sf1217615797(Gbrowse)
Chromosome: chr12 Position: 17615797 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1333 | 68.57% | 31.43% |
| All Indica | 760 | 59.08% | 40.92% |
| All Japonica | 453 | 83.89% | 16.11% |
| Aus | 66 | 66.67% | 33.33% |
| Indica I | 346 | 48.55% | 51.45% |
| Indica II | 213 | 85.92% | 14.08% |
| Indica Intermediate | 201 | 48.76% | 51.24% |
| Temperate Japonica | 297 | 93.60% | 6.40% |
| Tropical Japonica | 92 | 65.22% | 34.78% |
| Japonica Intermediate | 64 | 65.62% | 34.38% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217615797 | T->A | LOC_Os12g29560(LOC_Os12g29560.1) | INTRON |