Detailed information of SNP:



SNP ID: sf1217615797(Gbrowse)

Chromosome: chr12

Position: 17615797
Major allele: T

Minor allele: A

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of A(minor allele)
All1333 68.57% 31.43%
All Indica760 59.08% 40.92%
All Japonica453 83.89% 16.11%
Aus66 66.67% 33.33%
Indica I346 48.55% 51.45%
Indica II213 85.92% 14.08%
Indica Intermediate201 48.76% 51.24%
Temperate Japonica297 93.60% 6.40%
Tropical Japonica92 65.22% 34.78%
Japonica Intermediate64 65.62% 34.38%
Group VI/Aromatic14 100.00% 0.00%
Intermediate40 67.50% 32.50%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1217615797 T->A LOC_Os12g29560(LOC_Os12g29560.1) INTRON