Detailed information of SNP:
|
SNP ID:
sf1217625771(Gbrowse)
Chromosome: chr12 Position: 17625771 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 90.49% | 9.51% |
| All Indica | 799 | 91.24% | 8.76% |
| All Japonica | 497 | 88.33% | 11.67% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 90.93% | 9.07% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 67.02% | 32.98% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217625771 | C->A | LOC_Os12g29580(LOC_Os12g29580.1) | INTRON |
| sf1217625771 | C->A | LOC_Os12g29580(LOC_Os12g29580.2) | INTRON |