Detailed information of SNP:
|
SNP ID:
sf1217628544(Gbrowse)
Chromosome: chr12 Position: 17628544 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 78.82% | 21.18% |
| All Indica | 797 | 73.40% | 26.60% |
| All Japonica | 496 | 88.51% | 11.49% |
| Aus | 64 | 67.19% | 32.81% |
| Indica I | 374 | 64.44% | 35.56% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 210 | 70.00% | 30.00% |
| Temperate Japonica | 335 | 92.84% | 7.16% |
| Tropical Japonica | 93 | 84.95% | 15.05% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217628544 | A->G | INTERGENIC | None |