Detailed information of SNP:
|
SNP ID:
sf1217629444(Gbrowse)
Chromosome: chr12 Position: 17629444 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 50.50% | 49.50% |
| All Indica | 790 | 68.35% | 31.65% |
| All Japonica | 497 | 24.14% | 75.86% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 373 | 60.59% | 39.41% |
| Indica II | 207 | 89.86% | 10.14% |
| Indica Intermediate | 210 | 60.95% | 39.05% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217629444 | T->C | INTERGENIC | None |