Detailed information of SNP:
|
SNP ID:
sf1217629781(Gbrowse)
Chromosome: chr12 Position: 17629781 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 62.81% | 37.19% |
| All Indica | 790 | 55.06% | 44.94% |
| All Japonica | 497 | 81.09% | 18.91% |
| Aus | 66 | 34.85% | 65.15% |
| Indica I | 375 | 48.53% | 51.47% |
| Indica II | 211 | 68.72% | 31.28% |
| Indica Intermediate | 204 | 52.94% | 47.06% |
| Temperate Japonica | 335 | 91.34% | 8.66% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217629781 | C->T | INTERGENIC | None |