Detailed information of SNP:
|
SNP ID:
sf1217630519(Gbrowse)
Chromosome: chr12 Position: 17630519 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 80.82% | 19.18% |
| All Indica | 794 | 70.28% | 29.72% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 63.64% | 36.36% |
| Indica I | 375 | 64.00% | 36.00% |
| Indica II | 209 | 87.56% | 12.44% |
| Indica Intermediate | 210 | 64.29% | 35.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217630519 | G->A | INTERGENIC | None |