Detailed information of SNP:
|
SNP ID:
sf1217636077(Gbrowse)
Chromosome: chr12 Position: 17636077 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 90.35% | 9.65% |
| All Indica | 799 | 94.62% | 5.38% |
| All Japonica | 497 | 82.70% | 17.30% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 92.54% | 7.46% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217636077 | A->T | INTERGENIC | None |