Detailed information of SNP:
|
SNP ID:
sf1217639870(Gbrowse)
Chromosome: chr12 Position: 17639870 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 69.80% | 30.20% |
| All Indica | 794 | 48.61% | 51.39% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 49.06% | 50.94% |
| Indica II | 212 | 53.30% | 46.70% |
| Indica Intermediate | 209 | 43.06% | 56.94% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217639870 | G->A | INTERGENIC | None |