Detailed information of SNP:
|
SNP ID:
sf1217643733(Gbrowse)
Chromosome: chr12 Position: 17643733 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 81.29% | 18.71% |
| All Indica | 797 | 76.29% | 23.71% |
| All Japonica | 497 | 88.53% | 11.47% |
| Aus | 66 | 78.79% | 21.21% |
| Indica I | 375 | 62.67% | 37.33% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 209 | 86.12% | 13.88% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217643733 | C->T | INTERGENIC | None |