Detailed information of SNP:
|
SNP ID:
sf1217646628(Gbrowse)
Chromosome: chr12 Position: 17646628 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 68.90% | 31.10% |
| All Indica | 798 | 90.48% | 9.52% |
| All Japonica | 497 | 36.42% | 63.58% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 375 | 89.87% | 10.13% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 210 | 86.19% | 13.81% |
| Temperate Japonica | 335 | 28.06% | 71.94% |
| Tropical Japonica | 94 | 69.15% | 30.85% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217646628 | T->C | INTERGENIC | None |