Detailed information of SNP:
|
SNP ID:
sf1217648424(Gbrowse)
Chromosome: chr12 Position: 17648424 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 75.90% | 24.10% |
| All Indica | 799 | 86.11% | 13.89% |
| All Japonica | 497 | 65.39% | 34.61% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 375 | 85.07% | 14.93% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 75.83% | 24.17% |
| Temperate Japonica | 335 | 69.25% | 30.75% |
| Tropical Japonica | 94 | 59.57% | 40.43% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217648424 | G->T | INTERGENIC | None |