Detailed information of SNP:
|
SNP ID:
sf1217648967(Gbrowse)
Chromosome: chr12 Position: 17648967 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 88.68% | 11.32% |
| All Indica | 795 | 91.19% | 8.81% |
| All Japonica | 496 | 84.48% | 15.52% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 93.58% | 6.42% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 208 | 84.13% | 15.87% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 93 | 46.24% | 53.76% |
| Japonica Intermediate | 68 | 69.12% | 30.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217648967 | C->T | INTERGENIC | None |