Detailed information of SNP:
|
SNP ID:
sf1217653048(Gbrowse)
Chromosome: chr12 Position: 17653048 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1379 | 79.19% | 20.81% |
| All Indica | 766 | 65.54% | 34.46% |
| All Japonica | 491 | 96.33% | 3.67% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 58.97% | 41.03% |
| Indica II | 191 | 65.45% | 34.55% |
| Indica Intermediate | 207 | 77.29% | 22.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 88 | 81.82% | 18.18% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217653048 | C->G | LOC_Os12g29600(LOC_Os12g29600.1) | Synonymous |