Detailed information of SNP:
|
SNP ID:
sf1217699969(Gbrowse)
Chromosome: chr12 Position: 17699969 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1384 | 55.13% | 44.87% |
| All Indica | 771 | 64.85% | 35.15% |
| All Japonica | 494 | 40.89% | 59.11% |
| Aus | 66 | 45.45% | 54.55% |
| Indica I | 364 | 52.47% | 47.53% |
| Indica II | 210 | 85.71% | 14.29% |
| Indica Intermediate | 197 | 65.48% | 34.52% |
| Temperate Japonica | 334 | 31.14% | 68.86% |
| Tropical Japonica | 93 | 67.74% | 32.26% |
| Japonica Intermediate | 67 | 52.24% | 47.76% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217699969 | T->C | LOC_Os12g29680(LOC_Os12g29680.1) | INTRON |