Detailed information of SNP:
|
SNP ID:
sf1217701477(Gbrowse)
Chromosome: chr12 Position: 17701477 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 69.49% | 30.51% |
| All Indica | 788 | 54.31% | 45.69% |
| All Japonica | 495 | 91.92% | 8.08% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 370 | 58.38% | 41.62% |
| Indica II | 209 | 38.76% | 61.24% |
| Indica Intermediate | 209 | 62.68% | 37.32% |
| Temperate Japonica | 334 | 96.11% | 3.89% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217701477 | T->C | INTERGENIC | None |