Detailed information of SNP:
|
SNP ID:
sf1217701991(Gbrowse)
Chromosome: chr12 Position: 17701991 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1390 | 59.14% | 40.86% |
| All Indica | 792 | 36.49% | 63.51% |
| All Japonica | 476 | 91.18% | 8.82% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 372 | 45.16% | 54.84% |
| Indica II | 211 | 20.85% | 79.15% |
| Indica Intermediate | 209 | 36.84% | 63.16% |
| Temperate Japonica | 332 | 93.67% | 6.33% |
| Tropical Japonica | 88 | 88.64% | 11.36% |
| Japonica Intermediate | 56 | 80.36% | 19.64% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217701991 | C->G | LOC_Os12g29690(LOC_Os12g29690.1) | Synonymous |