Detailed information of SNP:
|
SNP ID:
sf1217702278(Gbrowse)
Chromosome: chr12 Position: 17702278 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 96.17% | 3.83% |
| All Indica | 792 | 97.47% | 2.53% |
| All Japonica | 494 | 93.93% | 6.07% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 372 | 99.46% | 0.54% |
| Indica II | 211 | 93.84% | 6.16% |
| Indica Intermediate | 209 | 97.61% | 2.39% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 91 | 72.53% | 27.47% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217702278 | G->C | LOC_Os12g29690(LOC_Os12g29690.1) | Non-Synonymous SNP |