Detailed information of SNP:
|
SNP ID:
sf1217703202(Gbrowse)
Chromosome: chr12 Position: 17703202 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1391 | 55.50% | 44.50% |
| All Indica | 780 | 46.92% | 53.08% |
| All Japonica | 495 | 67.88% | 32.12% |
| Aus | 65 | 69.23% | 30.77% |
| Indica I | 365 | 54.25% | 45.75% |
| Indica II | 208 | 30.77% | 69.23% |
| Indica Intermediate | 207 | 50.24% | 49.76% |
| Temperate Japonica | 334 | 73.35% | 26.65% |
| Tropical Japonica | 93 | 38.71% | 61.29% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 37 | 56.76% | 43.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217703202 | A->T | LOC_Os12g29690(LOC_Os12g29690.1) | Non-Synonymous SNP |