Detailed information of SNP:
|
SNP ID:
sf1217705135(Gbrowse)
Chromosome: chr12 Position: 17705135 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 72.89% | 27.11% |
| All Indica | 791 | 70.92% | 29.08% |
| All Japonica | 496 | 81.05% | 18.95% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 372 | 59.95% | 40.05% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 206 | 71.84% | 28.16% |
| Temperate Japonica | 335 | 92.84% | 7.16% |
| Tropical Japonica | 93 | 64.52% | 35.48% |
| Japonica Intermediate | 68 | 45.59% | 54.41% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217705135 | C->A | LOC_Os12g29690(LOC_Os12g29690.1) | Non-Synonymous SNP |