Detailed information of SNP:
|
SNP ID:
sf1217706323(Gbrowse)
Chromosome: chr12 Position: 17706323 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1401 | 67.81% | 32.19% |
| All Indica | 789 | 51.33% | 48.67% |
| All Japonica | 492 | 93.09% | 6.91% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 371 | 67.12% | 32.88% |
| Indica II | 212 | 22.64% | 77.36% |
| Indica Intermediate | 206 | 52.43% | 47.57% |
| Temperate Japonica | 332 | 96.99% | 3.01% |
| Tropical Japonica | 92 | 77.17% | 22.83% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 58.97% | 41.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217706323 | C->G | LOC_Os12g29690(LOC_Os12g29690.1) | Synonymous |