Detailed information of SNP:
|
SNP ID:
sf1217710049(Gbrowse)
Chromosome: chr12 Position: 17710049 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1388 | 72.48% | 27.52% |
| All Indica | 781 | 59.41% | 40.59% |
| All Japonica | 495 | 90.51% | 9.49% |
| Aus | 59 | 81.36% | 18.64% |
| Indica I | 368 | 64.95% | 35.05% |
| Indica II | 205 | 43.90% | 56.10% |
| Indica Intermediate | 208 | 64.90% | 35.10% |
| Temperate Japonica | 333 | 97.00% | 3.00% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217710049 | A->T | INTERGENIC | None |