Detailed information of SNP:
SNP ID:
sf1217719637(Gbrowse)
Chromosome: chr12 Position: 17719637 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
---|---|---|---|
All | 1405 | 84.13% | 15.87% |
All Indica | 786 | 75.57% | 24.43% |
All Japonica | 497 | 94.97% | 5.03% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 97.33% | 2.67% |
Indica II | 203 | 35.47% | 64.53% |
Indica Intermediate | 208 | 75.48% | 24.52% |
Temperate Japonica | 335 | 99.70% | 0.30% |
Tropical Japonica | 94 | 76.60% | 23.40% |
Japonica Intermediate | 68 | 97.06% | 2.94% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1217719637 | A->G | INTERGENIC | None |