Detailed information of SNP:
|
SNP ID:
sf1217724606(Gbrowse)
Chromosome: chr12 Position: 17724606 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1302 | 69.35% | 30.65% |
| All Indica | 734 | 54.50% | 45.50% |
| All Japonica | 462 | 95.67% | 4.33% |
| Aus | 53 | 58.49% | 41.51% |
| Indica I | 355 | 57.46% | 42.54% |
| Indica II | 189 | 49.74% | 50.26% |
| Indica Intermediate | 190 | 53.68% | 46.32% |
| Temperate Japonica | 328 | 97.56% | 2.44% |
| Tropical Japonica | 76 | 88.16% | 11.84% |
| Japonica Intermediate | 58 | 94.83% | 5.17% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 43.59% | 56.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1217724606 | T->C | INTERGENIC | None |